References

  • [1] Altenbuchinger, M., Rehberg, T., Zacharias, H.U., Stämmler, F., Dettmer, K., Weber, D., Hiergeist, A., Gessner, A., Holler, E., Oefner, P.J. and Spang, R. (2016). Reference point insensitive molecular data analysis. Bioinformatics, 33(2):219-226.
  • [2] Bredel, M., Bredel, C., Juric, D., Harsh, G. R., Vogel, H., Recht, L. D., and Sikic, B. I. (2005). High-resolution genome-wide mapping of genetic alterations in human glial brain tumors. Cancer Research, 65:4088–4096.
  • [3] Gaines, B.R. and Zhou, H. (2016). Algorithms for fitting the constrained lasso. arXiv preprint arXiv:1611.01511.
  • [4] Stamey, T.A., Kabalin, J.N., McNeal, J.E., Johnstone, I.M., Freiha, F., Redwine, E.A. and Yang, N. (1989). Prostate specific antigen in the diagnosis and treatment of adenocarcinoma of the prostate: II. radical prostatectomy treated patients. Journal of Urology 141(5):1076–1083.
  • [5] Tibshirani, R., Saunders, M., Rosset, S., Zhu, J., and Knight, K. (2005), “Sparsity and Smoothness via the Fused Lasso,” Journal of the Royal Statistical Society: Series B (Statistical Methodology), 67, 91–108.
  • [6] Tibshirani, R. and Wang, P. (2008). Spatial smoothing and hot spot detection for CGH data using the fused lasso. Biostatistics, 9:18–29.
  • [7] Tibshirani, R. J., Hoefling, H., and Tibshirani, R. (2011). Nearly-isotonic regression. Technometrics, 53:54–61.
  • [8] Weber, D., Oefner, P. J., Hiergeist, A., Koestler, J., Gessner, A., Weber, M., Hahn, J., Wolff, D., Sta ̈mmler, F., Spang, R., Herr, W., Dettmer, K., and Holler, E. (2015). Low urinary undoxyl sulfate levels early after transplantation reflect a disrupted microbiome and are associated with poor outcome. Blood, 126:1723–1728.
  • [9] Wu, W. B., Woodroofe, M., and Mentz, G. (2001). Isotonic regression: another look at the changepoint problem. Biometrika, 88:793–804.